| 1 | Sacramento Republic FCNorthwestMLS NEXT Homegrown · 6–0–0 · 6 games · Without adj. 1 | MLS NEXT Homegrown | 6–0–0 | 6 | 3.14 | 1 |
| 2 | Philadelphia UnionMid-AtlanticMLS NEXT Homegrown · 9–0–0 · 9 games · Without adj. 9 | MLS NEXT Homegrown | 9–0–0 | 9 | 3.06 | 9 |
| 3 | FC DELCOMid-AtlanticMLS NEXT Homegrown · 8–0–0 · 8 games · Without adj. 12 | MLS NEXT Homegrown | 8–0–0 | 8 | 3.04 | 12 |
| 4 | Tulsa Greenwood SCFrontierMLS NEXT Homegrown · 5–0–0 · 5 games · Without adj. 16 | MLS NEXT Homegrown | 5–0–0 | 5 | 3.03 | 16 |
| 5 | New York City FCNortheastMLS NEXT Homegrown · 9–0–0 · 9 games · Without adj. 20 | MLS NEXT Homegrown | 9–0–0 | 9 | 3.02 | 20 |
| 6 | San Diego Surf ECNL B2012/13SouthwestECNL Boys · 6–0–0 · 6 games · Without adj. 3 | ECNL Boys | 6–0–0 | 6 | 2.95 | 3 |
| 7 | Atlanta UnitedSoutheastMLS NEXT Homegrown · 8–0–1 · 9 games · Without adj. 30 | MLS NEXT Homegrown | 8–0–1 | 9 | 2.94 | 30 |
| 8 | SUSA FC ACADEMY ECNL B2012/13New EnglandECNL Boys · 7–0–0 · 7 games · Without adj. 16 | ECNL Boys | 7–0–0 | 7 | 2.88 | 16 |
| 9 | Inter Miami CFFloridaMLS NEXT Homegrown · 5–0–1 · 6 games · Without adj. 43 | MLS NEXT Homegrown | 5–0–1 | 6 | 2.86 | 43 |
| 10 | Dallas Texans Academy ECNL B2012/13TexasECNL Boys · 10–0–1 · 11 games · Without adj. 28 | ECNL Boys | 10–0–1 | 11 | 2.80 | 28 |
| 10 | St. Louis Stars SC ECNL B2012/13HeartlandECNL Boys · 9–0–1 · 10 games · Without adj. 28 | ECNL Boys | 9–0–1 | 10 | 2.80 | 28 |
| 12 | Intercontinental Football Academy of New EnglandNew EnglandMLS NEXT Academy · 7–0–0 · 7 games · Without adj. 5 | MLS NEXT Academy | 7–0–0 | 7 | 2.78 | 5 |
| 13 | Lamorinda Soccer ClubNorthern California RedwoodMLS NEXT Academy · 6–0–0 · 6 games · Without adj. 7 | MLS NEXT Academy | 6–0–0 | 6 | 2.77 | 7 |
| 14 | Lowcountry UnitedCarolinasMLS NEXT Academy · 12–0–0 · 12 games · Without adj. 10 | MLS NEXT Academy | 12–0–0 | 12 | 2.75 | 10 |
| 14 | Tennessee SC ECNL B2012/13Mid-AmericaECNL Boys · 9–0–1 · 10 games · Without adj. 35 | ECNL Boys | 9–0–1 | 10 | 2.75 | 35 |
| 16 | Bethesda SCMid-AtlanticMLS NEXT Academy · 7–0–0 · 7 games · Without adj. 16 | MLS NEXT Academy | 7–0–0 | 7 | 2.73 | 16 |
| 16 | Real Salt LakeFrontierMLS NEXT Homegrown · 8–1–1 · 10 games · Without adj. 84 | MLS NEXT Homegrown | 8–1–1 | 10 | 2.73 | 84 |
| 16 | Burlingame Soccer ClubNorthern California CoastMLS NEXT Academy · 7–0–0 · 7 games · Without adj. 16 | MLS NEXT Academy | 7–0–0 | 7 | 2.73 | 16 |
| 16 | CDA Slammers FC ECNL Rl B2012/13 WhiteSouthwestECNL RL Boys · 5–0–0 · 5 games · Without adj. 2 | ECNL RL Boys | 5–0–0 | 5 | 2.73 | 2 |
| 20 | FSA FC ECNL B2012/13New EnglandECNL Boys · 7–0–1 · 8 games · Without adj. 43 | ECNL Boys | 7–0–1 | 8 | 2.71 | 43 |
| 21 | Eastside FC ECNL B2012/13NorthwestECNL Boys · 5–0–1 · 6 games · Without adj. 48 | ECNL Boys | 5–0–1 | 6 | 2.70 | 48 |
| 22 | Western United Pioneers FC ECNL RL B2012/13Northeast · NorthECNL RL Boys · 7–0–0 · 7 games · Without adj. 4 | ECNL RL Boys | 7–0–0 | 7 | 2.69 | 4 |
| 22 | Richmond United ECNL B2012/13Mid-AtlanticECNL Boys · 9–1–0 · 10 games · Without adj. 52 | ECNL Boys | 9–1–0 | 10 | 2.69 | 52 |
| 24 | Ohio Premier ECNL B2012/13Ohio ValleyECNL Boys · 6–0–1 · 7 games · Without adj. 55 | ECNL Boys | 6–0–1 | 7 | 2.68 | 55 |
| 24 | Total Futbol AcademySouthwestMLS NEXT Homegrown · 6–1–1 · 8 games · Without adj. 101 | MLS NEXT Homegrown | 6–1–1 | 8 | 2.68 | 101 |
| 24 | Stockton TLJ FC ECNL RL B2012/13NorCalECNL RL Boys · 9–0–0 · 9 games · Without adj. 5 | ECNL RL Boys | 9–0–0 | 9 | 2.68 | 5 |
| 27 | FC WestchesterNortheastMLS NEXT Homegrown · 7–1–1 · 9 games · Without adj. 106 | MLS NEXT Homegrown | 7–1–1 | 9 | 2.67 | 106 |
| 27 | Seattle United ECNL B2012/13NorthwestECNL Boys · 6–0–1 · 7 games · Without adj. 59 | ECNL Boys | 6–0–1 | 7 | 2.67 | 59 |
| 27 | Orlando City SCFloridaMLS NEXT Homegrown · 5–0–2 · 7 games · Without adj. 106 | MLS NEXT Homegrown | 5–0–2 | 7 | 2.67 | 106 |
| 27 | Toca Fusion Elite ECNL RL B2012/13Heartland · SouthECNL RL Boys · 9–0–0 · 9 games · Without adj. 7 | ECNL RL Boys | 9–0–0 | 9 | 2.67 | 7 |
| 31 | St. Louis City SCMid-AmericaMLS NEXT Homegrown · 5–0–2 · 7 games · Without adj. 112 | MLS NEXT Homegrown | 5–0–2 | 7 | 2.66 | 112 |
| 31 | Strikers FCSouthern CaliforniaMLS NEXT Academy · 7–0–0 · 7 games · Without adj. 27 | MLS NEXT Academy | 7–0–0 | 7 | 2.66 | 27 |
| 33 | Penn Fusion Soccer Academy ECNL B2012/13North AtlanticECNL Boys · 7–1–0 · 8 games · Without adj. 66 | ECNL Boys | 7–1–0 | 8 | 2.65 | 66 |
| 33 | Northern Indiana Express ECNL RL B2012/13Chicago MetroECNL RL Boys · 5–0–0 · 5 games · Without adj. 10 | ECNL RL Boys | 5–0–0 | 5 | 2.65 | 10 |
| 33 | Los Angeles Sports ClubSouthwestMLS NEXT Homegrown · 7–1–1 · 9 games · Without adj. 116 | MLS NEXT Homegrown | 7–1–1 | 9 | 2.65 | 116 |
| 36 | Steel City FC ECNL RL B2012/13GLA · EastECNL RL Boys · 8–0–0 · 8 games · Without adj. 12 | ECNL RL Boys | 8–0–0 | 8 | 2.64 | 12 |
| 36 | Ohio Galaxies FC ECNL RL B2012/13GLA · SouthECNL RL Boys · 7–0–0 · 7 games · Without adj. 12 | ECNL RL Boys | 7–0–0 | 7 | 2.64 | 12 |
| 36 | Chicago Magic Soccer Club ECNL RL B2012/13MidwestECNL RL Boys · 7–0–0 · 7 games · Without adj. 12 | ECNL RL Boys | 7–0–0 | 7 | 2.64 | 12 |
| 39 | FC Tucson Youth Soccer ClubDesertMLS NEXT Academy · 7–0–1 · 8 games · Without adj. 32 | MLS NEXT Academy | 7–0–1 | 8 | 2.63 | 32 |
| 39 | Florida Kraze Krush ECNL B2012/13FloridaECNL Boys · 4–1–0 · 5 games · Without adj. 72 | ECNL Boys | 4–1–0 | 5 | 2.63 | 72 |
| 41 | San Diego FCSouthwestMLS NEXT Homegrown · 6–1–1 · 8 games · Without adj. 127 | MLS NEXT Homegrown | 6–1–1 | 8 | 2.62 | 127 |
| 41 | Utah Athletic ECNL RL B2012/13Mountain · Ecnl Regional League - WestECNL RL Boys · 13–0–0 · 13 games · Without adj. 20 | ECNL RL Boys | 13–0–0 | 13 | 2.62 | 20 |
| 41 | Edina Soccer Club ECNL RL B2012/13Twin Cities · Group BECNL RL Boys · 6–0–0 · 6 games · Without adj. 20 | ECNL RL Boys | 6–0–0 | 6 | 2.62 | 20 |
| 41 | Laguna United FCSouthern CaliforniaMLS NEXT Academy · 6–0–0 · 6 games · Without adj. 33 | MLS NEXT Academy | 6–0–0 | 6 | 2.62 | 33 |
| 45 | Manta ECNL RL B2012/13GLA · NorthECNL RL Boys · 6–0–0 · 6 games · Without adj. 23 | ECNL RL Boys | 6–0–0 | 6 | 2.61 | 23 |
| 45 | FC Dallas Youth Blue ECNL RL NTX B2012/13North Texas · BlueECNL RL Boys · 7–0–0 · 7 games · Without adj. 23 | ECNL RL Boys | 7–0–0 | 7 | 2.61 | 23 |
| 45 | Orlando City Lake NonaSunshine NorthMLS NEXT Academy · 9–0–1 · 10 games · Without adj. 34 | MLS NEXT Academy | 9–0–1 | 10 | 2.61 | 34 |
| 48 | Beachside of ConnecticutNortheastMLS NEXT Homegrown · 5–1–1 · 7 games · Without adj. 134 | MLS NEXT Homegrown | 5–1–1 | 7 | 2.60 | 134 |
| 48 | Sporting WichitaHeartlandMLS NEXT Academy · 9–0–1 · 10 games · Without adj. 35 | MLS NEXT Academy | 9–0–1 | 10 | 2.60 | 35 |
| 48 | Charlotte SA Academy ECNL B2012/13Mid-AtlanticECNL Boys · 6–0–2 · 8 games · Without adj. 76 | ECNL Boys | 6–0–2 | 8 | 2.60 | 76 |
| 48 | Inter Atlanta FCSouthMLS NEXT Academy · 10–0–1 · 11 games · Without adj. 35 | MLS NEXT Academy | 10–0–1 | 11 | 2.60 | 35 |
| 48 | Sting ECNL RL B2012/13TexasECNL RL Boys · 8–0–0 · 8 games · Without adj. 25 | ECNL RL Boys | 8–0–0 | 8 | 2.60 | 25 |
| 53 | GSA ECNL B2012/13SoutheastECNL Boys · 5–1–0 · 6 games · Without adj. 80 | ECNL Boys | 5–1–0 | 6 | 2.59 | 80 |
| 53 | STA ECNL B2012/13North AtlanticECNL Boys · 7–1–0 · 8 games · Without adj. 80 | ECNL Boys | 7–1–0 | 8 | 2.59 | 80 |
| 55 | Loudoun Soccer ClubVirginiaMLS NEXT Academy · 7–0–1 · 8 games · Without adj. 39 | MLS NEXT Academy | 7–0–1 | 8 | 2.58 | 39 |
| 55 | Sporting California USA ECNL RL B2012/13 REDSouthwestECNL RL Boys · 5–0–0 · 5 games · Without adj. 26 | ECNL RL Boys | 5–0–0 | 5 | 2.58 | 26 |
| 55 | Dallas Hornets EastPioneerMLS NEXT Academy · 9–1–0 · 10 games · Without adj. 39 | MLS NEXT Academy | 9–1–0 | 10 | 2.58 | 39 |
| 58 | Louisiana Fire SC ECNL B2012/13Mid-AmericaECNL Boys · 8–0–2 · 10 games · Without adj. 85 | ECNL Boys | 8–0–2 | 10 | 2.57 | 85 |
| 58 | Cedar Stars Academy NewarkGarden StateMLS NEXT Academy · 7–0–1 · 8 games · Without adj. 41 | MLS NEXT Academy | 7–0–1 | 8 | 2.57 | 41 |
| 58 | Michigan WolvesMid-AmericaMLS NEXT Homegrown · 7–0–4 · 11 games · Without adj. 148 | MLS NEXT Homegrown | 7–0–4 | 11 | 2.57 | 148 |
| 61 | Jersey Football ClubGarden StateMLS NEXT Academy · 8–1–0 · 9 games · Without adj. 43 | MLS NEXT Academy | 8–1–0 | 9 | 2.56 | 43 |
| 62 | Concorde Fire Platinum ECNL B2012/13SoutheastECNL Boys · 6–0–2 · 8 games · Without adj. 94 | ECNL Boys | 6–0–2 | 8 | 2.55 | 94 |
| 62 | Chicago Fire Youth SCNorthMLS NEXT Academy · 6–1–0 · 7 games · Without adj. 48 | MLS NEXT Academy | 6–1–0 | 7 | 2.55 | 48 |
| 62 | The Football AcademyMid-AtlanticMLS NEXT Homegrown · 6–2–0 · 8 games · Without adj. 160 | MLS NEXT Homegrown | 6–2–0 | 8 | 2.55 | 160 |
| 62 | Pateadores ECNL B2012/13SouthwestECNL Boys · 5–1–0 · 6 games · Without adj. 94 | ECNL Boys | 5–1–0 | 6 | 2.55 | 94 |
| 66 | World Class FC ECNL RL B2012/13North AtlanticECNL RL Boys · 6–0–0 · 6 games · Without adj. 30 | ECNL RL Boys | 6–0–0 | 6 | 2.54 | 30 |
| 67 | COSC ECNL B2012/13Northern CalECNL Boys · 7–1–1 · 9 games · Without adj. 101 | ECNL Boys | 7–1–1 | 9 | 2.53 | 101 |
| 68 | Eclipse Select Soccer Club ECNL B2012/13MidwestECNL Boys · 7–1–1 · 9 games · Without adj. 106 | ECNL Boys | 7–1–1 | 9 | 2.52 | 106 |
| 68 | Louisville City Academy ECNL B2012/13Ohio ValleyECNL Boys · 5–1–0 · 6 games · Without adj. 106 | ECNL Boys | 5–1–0 | 6 | 2.52 | 106 |
| 68 | Western Washington Surf SCPacific NorthwestMLS NEXT Academy · 6–1–0 · 7 games · Without adj. 59 | MLS NEXT Academy | 6–1–0 | 7 | 2.52 | 59 |
| 68 | Monarchs AZDesertMLS NEXT Academy · 6–1–0 · 7 games · Without adj. 59 | MLS NEXT Academy | 6–1–0 | 7 | 2.52 | 59 |
| 72 | Marin FC ECNL B2012/13Northern CalECNL Boys · 6–1–1 · 8 games · Without adj. 112 | ECNL Boys | 6–1–1 | 8 | 2.51 | 112 |
| 72 | The Player Progression AcademyMid-AtlanticMLS NEXT Academy · 7–1–0 · 8 games · Without adj. 62 | MLS NEXT Academy | 7–1–0 | 8 | 2.51 | 62 |
| 72 | Capital City SouthPioneerMLS NEXT Academy · 6–1–0 · 7 games · Without adj. 62 | MLS NEXT Academy | 6–1–0 | 7 | 2.51 | 62 |
| 72 | Colorado United SCMountainMLS NEXT Academy · 5–0–1 · 6 games · Without adj. 62 | MLS NEXT Academy | 5–0–1 | 6 | 2.51 | 62 |
| 72 | Austin FCFrontierMLS NEXT Homegrown · 4–1–0 · 5 games · Without adj. 171 | MLS NEXT Homegrown | 4–1–0 | 5 | 2.51 | 171 |
| 72 | LA Surf Soccer ClubSouthwestMLS NEXT Homegrown · 7–2–1 · 10 games · Without adj. 171 | MLS NEXT Homegrown | 7–2–1 | 10 | 2.51 | 171 |
| 78 | Weston FCFloridaMLS NEXT Homegrown · 6–1–2 · 9 games · Without adj. 179 | MLS NEXT Homegrown | 6–1–2 | 9 | 2.50 | 179 |
| 78 | Galaxy Soccer ClubNorthMLS NEXT Academy · 6–1–0 · 7 games · Without adj. 66 | MLS NEXT Academy | 6–1–0 | 7 | 2.50 | 66 |
| 78 | Fort Lauderdale United FC ECNL B2012/13FloridaECNL Boys · 9–2–0 · 11 games · Without adj. 116 | ECNL Boys | 9–2–0 | 11 | 2.50 | 116 |
| 81 | FC DELCO ECNL RL B2012/13North AtlanticECNL RL Boys · 8–0–1 · 9 games · Without adj. 38 | ECNL RL Boys | 8–0–1 | 9 | 2.49 | 38 |
| 81 | Virginia VelocityVirginiaMLS NEXT Academy · 6–1–0 · 7 games · Without adj. 69 | MLS NEXT Academy | 6–1–0 | 7 | 2.49 | 69 |
| 83 | VA Reign FC ECNL RL B2012/13VirginiaECNL RL Boys · 7–0–1 · 8 games · Without adj. 41 | ECNL RL Boys | 7–0–1 | 8 | 2.47 | 41 |
| 84 | Select ECNL RL B2012/13New EnglandECNL RL Boys · 8–1–0 · 9 games · Without adj. 43 | ECNL RL Boys | 8–1–0 | 9 | 2.46 | 43 |
| 84 | LTFC ECNL RL STXCL B2012/13STXCLECNL RL Boys · 6–0–1 · 7 games · Without adj. 43 | ECNL RL Boys | 6–0–1 | 7 | 2.46 | 43 |
| 84 | Inter Atlanta FCSoutheastMLS NEXT Homegrown · 6–1–3 · 10 games · Without adj. 193 | MLS NEXT Homegrown | 6–1–3 | 10 | 2.46 | 193 |
| 87 | Colorado Storm South ECNL RL B2012/13Mountain · Ecnl Regional League - EastECNL RL Boys · 6–0–1 · 7 games · Without adj. 48 | ECNL RL Boys | 6–0–1 | 7 | 2.45 | 48 |
| 87 | Lexington Sporting Club ECNL RL B2012/13GLA · SouthECNL RL Boys · 8–1–0 · 9 games · Without adj. 48 | ECNL RL Boys | 8–1–0 | 9 | 2.45 | 48 |
| 89 | CVFA ECNL RL B2012/13NorCalECNL RL Boys · 7–1–0 · 8 games · Without adj. 52 | ECNL RL Boys | 7–1–0 | 8 | 2.44 | 52 |
| 89 | Strikers FCSouthwestMLS NEXT Homegrown · 5–1–2 · 8 games · Without adj. 199 | MLS NEXT Homegrown | 5–1–2 | 8 | 2.44 | 199 |
| 89 | Atlantic UnitedNortheastMLS NEXT Academy · 7–0–2 · 9 games · Without adj. 80 | MLS NEXT Academy | 7–0–2 | 9 | 2.44 | 80 |
| 89 | Michigan Tigers FCGreat Lakes NorthMLS NEXT Academy · 7–0–2 · 9 games · Without adj. 80 | MLS NEXT Academy | 7–0–2 | 9 | 2.44 | 80 |
| 89 | North Surf ECNL RL B2012/13Twin Cities · Group AECNL RL Boys · 5–0–1 · 6 games · Without adj. 52 | ECNL RL Boys | 5–0–1 | 6 | 2.44 | 52 |
| 89 | Real Futbol AcademyMid-AtlanticMLS NEXT Homegrown · 6–2–1 · 9 games · Without adj. 199 | MLS NEXT Homegrown | 6–2–1 | 9 | 2.44 | 199 |
| 95 | Eastside FC ECNL RL B2012/13NorthwestECNL RL Boys · 7–0–1 · 8 games · Without adj. 55 | ECNL RL Boys | 7–0–1 | 8 | 2.43 | 55 |
| 95 | Brentwood SC ECNL RL B2012/13Northeast · NorthECNL RL Boys · 7–1–0 · 8 games · Without adj. 55 | ECNL RL Boys | 7–1–0 | 8 | 2.43 | 55 |
| 95 | Mississippi Surf ECNL RL B2012/13Mid-AmericaECNL RL Boys · 7–0–1 · 8 games · Without adj. 55 | ECNL RL Boys | 7–0–1 | 8 | 2.43 | 55 |
| 98 | Carolina Velocity FCCarolinasMLS NEXT Academy · 6–1–0 · 7 games · Without adj. 85 | MLS NEXT Academy | 6–1–0 | 7 | 2.42 | 85 |
| 98 | Wisconsin United FCNorthMLS NEXT Academy · 4–0–1 · 5 games · Without adj. 85 | MLS NEXT Academy | 4–0–1 | 5 | 2.42 | 85 |
| 98 | Nationals SC ECNL B2012/13Ohio ValleyECNL Boys · 5–0–3 · 8 games · Without adj. 148 | ECNL Boys | 5–0–3 | 8 | 2.42 | 148 |